tracts.core

Functions

optimize(p0, bins, Ls, data, nsamp, model_func)	Optimizes model parameters using the BFGS method.
optimize_bfgs(p0, bins, Ls, data, nsamp, ...)	Optimizes model parameters using the BFGS method.
optimize_brute_fracs2(bins, Ls, data, nsamp, ...)	Optimize parameters to fit the model to data using the brute-force method.
optimize_brute_multifracs(bins, Ls, ...[, ...])	Optimizes parameters to fit the model to data using the brute-force method.
optimize_cob(p0, bins, Ls, data, nsamp, ...)	Optimizes model parameters using the COBYLA method.
optimize_cob_fracs(p0, bins, Ls, data, ...)	Optimizes parameters to fit the model to data using the COBYLA method.
optimize_cob_fracs2(p0, bins, Ls, data, ...)	Optimize parameters to fit the model to data using the COBYLA method.
optimize_cob_multifracs(p0, bins, Ls, ...[, ...])	Optimizes parameters to fit the model to data using the COBYLA method.
optimize_cob_sex_biased(p0, population, ...)	Optimizes log-likelihood over the set of parameters specified in the demographic model, for a given admixture model for autosomes and allosomes.
optimize_cob_sex_biased_fixed_values(p0, ...)	Optimizes log-likelihood over the set of parameters specified in the demographic model, for a given admixture model for autosomes and allosomes.
optimize_slsqp(p0, bins, Ls, data, nsamp, ...)	Optimizes model parameters using the SLSQ method.
plotmig(mig[, colordict, order])
rate_to_optimizer_function(x)
rate_to_physical_function(x)
sex_bias_to_optimizer_function(y)
sex_bias_to_physical_function(x)
time_to_optimizer_function(x)
time_to_physical_function(x)