Index _ | C | F | G | I | L | M | P | R | S _ __init__() (graph_matcher.GraphMatcher method) (graph_matcher.GraphMatcher.MatcherLogger method) (potential_mrca_processed_graph.PotentialMrcaProcessedGraph method) (subtree_matcher.SubtreeMatcher method) C close() (graph_matcher.GraphMatcher.MatcherLogger method) F find_alignments() (graph_matcher.GraphMatcher method) from_pedigree() (potential_mrca_processed_graph.PotentialMrcaProcessedGraph class method) G get_all_subtree_alignments() (subtree_matcher.SubtreeMatcher method) get_initial_simulation_mapping_for_mode() (in module graph_matcher) get_minimal_path_length() (potential_mrca_processed_graph.PotentialMrcaProcessedGraph method) get_pedigree_simulation_probands_for_alignment_mode() (in module graph_matcher) get_processed_graph_from_file() (potential_mrca_processed_graph.PotentialMrcaProcessedGraph static method) get_subtree_matcher_for_coalescent_tree_proband() (in module graph_matcher) get_vertex_ancestors() (potential_mrca_processed_graph.PotentialMrcaProcessedGraph method) graph_matcher module GraphMatcher (class in graph_matcher) GraphMatcher.MatcherLogger (class in graph_matcher) I initialize_potential_mrca_map() (potential_mrca_processed_graph.PotentialMrcaProcessedGraph method) L log() (graph_matcher.GraphMatcher method) (graph_matcher.GraphMatcher.MatcherLogger method) log_section_delimiter() (graph_matcher.GraphMatcher method) log_subsection_delimiter() (graph_matcher.GraphMatcher method) log_vertex_inference_time() (graph_matcher.GraphMatcher.MatcherLogger method) M module graph_matcher potential_mrca_processed_graph subtree_matcher P potential_mrca_processed_graph module PotentialMrcaProcessedGraph (class in potential_mrca_processed_graph) R root_coalescent_tree (subtree_matcher.SubtreeMatcher attribute) root_pedigree (subtree_matcher.SubtreeMatcher attribute) S section_delimiter (graph_matcher.GraphMatcher.MatcherLogger attribute) subsection_delimiter (graph_matcher.GraphMatcher.MatcherLogger attribute) subtree_matcher module SubtreeMatcher (class in subtree_matcher)